get_metadata_genbank: Compile Metadata for GenBank Submission

In CUGBF/deidentifiedDB: Utility to Manage Clemson University COVID-19 Surveillance Data

Compile Metadata for GenBank Submission

Description

Compile Metadata for GenBank Submission

Usage

get_metadata_genbank(
  testkit_ids,
  sample_collection_tbl = NULL,
  demographics_tbl = NULL,
  viralrecon_tbl = NULL,
  deidentifiedDB = NULL,
  time_zone = "America/New_York"
)

Arguments

testkit_ids	Testkit IDs to include in the GenBank Submission
sample_collection_tbl	Path to the tibble containing sample collection data
demographics_tbl	Path to the tibble containing demographics data
viralrecon_tbl	Path to the tibble containing viralrecon results
deidentifiedDB	Path to the deidentifiedDB SQLite File
time_zone	Time zone for collection time (Default: "America/New_York")

Value

Tibble containing metadata information for GenBank submission.

CUGBF/deidentifiedDB documentation built on Sept. 13, 2023, 6:28 a.m.