API for Caetanods/ratematrix
Bayesian Estimation of the Evolutionary Rate Matrix

Global functions
anoles Man page
calcNodeToNode Source code
calcNodeToTip Source code
calcNodeToTipNode Source code
centrarchidae Man page
checkConvergence Man page Source code
checkHPD Source code
checkHeidelTest Source code
computeESS Man page Source code
continueMCMC Man page Source code
cov2cor_C Source code
estimateTimeMCMC Man page Source code
extractCorrelation Man page Source code
getEllipseMatrix Source code
getOverlap Source code
hastingsDensity Source code
likelihoodFunction Man page Source code
logAnalyzer Man page Source code
logDensityIWish Source code
logDensityMvNorm Source code
logLikNode Source code
logLikPrunningMCMC Source code
logLikPrunningMCMC_C Source code
logLikSingleRegime Source code
makePrior Man page Source code
makePriorIWish Source code
makePropIWish Source code
makePropIWish_C Source code
makePropMean Source code
makePropMeanForMult Source code
makePropMeanForMultList Source code
makePropMeanList Source code
makePropMultSigma Source code
makePropMultSigmaList Source code
makePropSingleSigma Source code
makePropSingleSigmaList Source code
mergePosterior Man page Source code
mergeSimmap Man page Source code
multRegimeMCMC Source code
multiplierProposal Source code
mvLogLik Source code
plotHeatmat Source code
plotPrior Man page Source code
plotRatematrix Man page Source code
plotRootValue Man page Source code
print.ratematrix_multi_chain Man page Source code
print.ratematrix_multi_mcmc Man page Source code
print.ratematrix_prior_function Man page Source code
print.ratematrix_prior_sample Man page Source code
print.ratematrix_single_chain Man page Source code
print.ratematrix_single_mcmc Man page Source code
priorCorr_C Source code
priorDensityVcvBarnard Source code
ratematrix Man page
ratematrix-package Man page
ratematrixMCMC Man page Source code
readMCMC Man page Source code
readMultRegimeMCMC Source code
readSingleRegimeMCMC Source code
riwish Source code
runRatematrixMCMC_C Source code
runRatematrixMultiMCMC_C Source code
samplePrior Man page Source code
samplePriorSeparationLimits Source code
sampleTreeClade Source code
simRatematrix Man page Source code
singleRegimeMCMC Source code
slideWindow Source code
slideWindowPositive Source code
testRatematrix Man page Source code
writeToFile Source code
writeToMultFile Source code
Caetanods/ratematrix documentation built on July 21, 2018, 9:11 a.m.