R/dataset_anoles.R

In Caetanods/ratematrix: Bayesian Estimation of the Evolutionary Rate Matrix

#' Data and phylogenetic tree for Anolis lizards
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#' See description of the data in Caetano and Harmon (2018). Measurements are log-transformed. Morphological data was compiled from Pinto et al. (2008), Mahler (2010), and Moreno-Arias and Calderon-Espinosa (2016). "Limb_length" data is a composite measurement calculated from the sum of the parts of the front limb.
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#' @docType data
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#' @usage data(anoles)
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#' @format A list with a dataframe with the morphological data ($data) and a list of stochastic mapped trees with three regimes "island", "mainland" and "mainland.2" ($phy.map).
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#' @keywords datasets
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#' @references Moreno-Arias, R. A., and M. L. Calderon-Espinosa. 2016. Patterns of morphological diversification of mainland Anolis lizards from northwestern South America. Zool J Linn Soc 176:632–647.
#' @references Pinto, G., D. L. Mahler, L. J. Harmon, and J. B. Losos. 2008. Testing the island effect in adaptive radiation: rates and patterns of morphological diversification in Caribbean and mainland Anolis lizards. Proc Biol Sci 275:2749–2757.
#' @references Mahler, D. L., L. J. Revell, R. E. Glor, and J. B. Losos. 2010. Ecological Opportunity and the Rate of Morphological Evolution in the Diversification of Greater Antillean Anoles. Evolution 64:2731–2745.
"anoles"