distance: Distance

In Caleb-Huo/BayesMP: An R package perform BayesMP

Description

Dissimilarity matrix calculation.

Usage

distance(plus, minus, nsample, alpha = 0, method = "cos")

Arguments

plus	p*n matrix. Each element represents the posterior probablity of a gene to be positive DE.
minus	p*n matrix. Each element represents the posterior probablity of a gene to be negative DE.
nsample	Total number of posterior samples excluding burning period.
alpha	Forge parameter
method	Choose one from those: cos, KL, L1, L2, L2_2D, Hellinger.

Details

Based on DE posterior probablity of gene*study matrix, calculate gene-gene distance

Value

Dissimilarity matrix. p*p

Author(s)

Zhiguang Huo <[e-mail]>

Examples

G<-10
S<-3
nsample <- 10000
plus <- matrix(c(sample(nsample,G*S,replace = TRUE),rep(0,G*S)),2*G,S)
minus <- matrix(c(rep(0,G*S),sample(nsample,G*S,replace = TRUE)),2*G,S)
dissimilarity <- distance(plus, minus, nsample)

Caleb-Huo/BayesMP documentation built on May 6, 2019, 9:27 a.m.