agPlottingDF2 | Example aggregate plotting data |
arrayMean | Truncated normal distribution |
buildDataAgg | Build output dataframes for aggregate data |
buildDataCU | Build output dataframes for CU data |
calcCanEROU_fixedER | Title |
calcErr | Calculate observed error |
calcObsCatch | Calculate observed catch |
calcRealCatch | Calculate realized catches |
calcSynchMetrics | Calculate synchrony metrics |
calcTAC | Calculate total allowable catch |
calcTAC_fixedER | Title |
checkInteger | Check integer |
constrain | Constrain mixed-stock harvest |
coordRadar | Get radar coordinates |
cuPlottingDF2 | Example CU-specific plotting data |
cv | cv |
dot-onUnload | Unload DLL |
exampleHCRList | Example data for harvest control rule functions |
extinctionCheck | Extinction check |
fastLm | Estimate coefficients for linear model. |
genCycle | Generate cycle lines |
genericRecoverySim | Recovery Simulator - Generic Version |
genMean | Generational mean |
genOutputList | Generate list of outputs |
geoMean | Calculate geometric mean |
getResiduals | Gather stock-recruit residuals |
getSRPars | Summarize stock-recruit parameters |
getSRPars_randomSamp | Sample stock-recruit parameters from posterior distribution |
getTau | Estimate tau |
infill | Infill spawner/recruit abundance |
larkinModel | Generate recruit abundance with Larkin model |
larkinParameters | Posterior estimates of Ricker stock recruit parameters |
mutate_when | mutate_when |
mvLogisticLogProp | Calculate multivariate logistric proportions |
pipe | Pipe operator |
plotAgDot | Aggregate dot plot |
plotAgTradeoff | Aggregate trade off plot |
plotContTradeOffs | Double y-axis Walters plot |
plotCUDot | CU-specific dot plot |
plotCUTradeoff | CU-specific trade off plot |
plotDiagCU | Diagnostic plot |
plotRadar | Radar plot |
ppnAgeErr | Generate log-normal error associated with proportions data |
ppnCatchErr | Generate log-normal error associated with catch data |
qHigh | Calculate upper quantile |
qLow | Calculate lower quantile |
quickLm | Linear model |
recMatrix | Fraser River recruitment matrix |
recoverySim | Recovery simulator |
recPpns | Proportion of recruits at age for Fraser River sockeye |
rickerModel | Generate recruit abundance with Ricker model |
rickerParameters | Posterior estimates of Ricker stock recruit parameters |
rickerSurvModel | Generate recruit abundance with the Ricker Model with a... |
samSim | samSim |
sGenOptimum | Optimize sGen |
sGenSolver | Solve for sGen |
synchList | Simulated time series list |
theme_sleekX | Minimalist ggplot theme |
ungroupRowwiseDF | ungroupRowwiseDF |
wtdCV | Calculate weighted component CV |
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