Files in CamFreshwater/samSim
Closed-loop salmon dynamics simulator
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/RcppExports.R
R/arrayMeans.R
R/buildDataframe.R
R/calcBenchmarks.R
R/calcCanEROU_fixedER.R
R/calcObsCatch.R
R/calcObservedError.R
R/calcQuantile.R
R/calcRealCatch.R
R/calcSynchMetrics.R
R/calcTAC.R
R/calcTAC_fixedER.R
R/cv.R
R/estimateTau.R
R/exampleData_fraserRecAgePpns.R
R/exampleData_fraserRecMatrix.R
R/exampleData_fraserSR.R
R/exampleData_harvestControlRule.R
R/exampleData_plottingDF.R
R/exampleData_synchList.R
R/extinctionCheck.R
R/generateCycle.R
R/generateOutputList.R
R/generationMean.R
R/genericRecoverySimulator.R
R/getResiduals.R
R/getSRPars.R
R/getSRPars_randomSamp.R
R/infillMatrices.R
R/mutateWhen.R
R/plotDblAxis.R
R/plotDiagnostics.R
R/plotDots.R
R/plotRadar.R
R/plotTradeoffs.R
R/ppnErr.R
R/quickLM.R
R/recoverySimulator.R
R/samSim.R
R/sleekTheme.R
R/stockRecruitModels.R
R/tacConstraint.R
R/ungroupRowwise.R
R/utils-pipe.R
R/wtdCV.R
README.md
Rmd/benchmarking.Rmd
Rmd/betaDistributionBounds.Rmd
Rmd/dummyRealizedHCR.R
Rmd/ecology.csl
Rmd/exampleSimRun.Rmd
Rmd/techRepBib.bib
Rmd/techReport.Rmd
Rmd/techReport.log
Rmd/techReport.pdf
Rmd/techReportSimRuns.R
data/IFCohoPars/cohoCUPars.csv
data/IFCohoPars/cohoCorrMat.csv
data/IFCohoPars/cohoRecDatTrim.csv
data/IFCohoPars/cohoRickerSurv_mcmc.csv
data/IFCohoPars/cohoSimPars.csv
data/agPlottingDF.rda
data/agPlottingDF2.rda
data/cuPlottingDF.rda
data/cuPlottingDF2.rda
data/exampleHCRList.rda
data/fraserDat/fraserCUPars.csv
data/fraserDat/fraserCUParsFRP.csv
data/fraserDat/fraserCatchDatTrim.csv
data/fraserDat/fraserRecDatTrim.csv
data/fraserDat/pooledLarkinMCMCPars.csv
data/fraserDat/pooledRickerMCMCPars.csv
data/fraserDat/summOnlyCUPars.csv
data/fraserDat/tamRefPts.csv
data/fraserDat/trimRecursiveLarkinMCMCPars.csv
data/fraserDat/trimRecursiveRickerMCMCPars.csv
data/fraserDat_testLRP/fraserCUPars.csv
data/fraserDat_testLRP/fraserCatchDatTrim.csv
data/fraserDat_testLRP/fraserMPInputs_exampleSimPar.csv
data/fraserDat_testLRP/fraserRecDatTrim.csv
data/fraserDat_testLRP/pooledLarkinMCMCPars.csv
data/fraserDat_testLRP/pooledRickerMCMCPars.csv
data/larkinParameters.rda
data/manProcScenarios/fraserMPInputs_exampleSimPar.csv
data/manProcScenarios/fraserMPInputs_prodRangeSimInput.csv
data/manProcScenarios/fraserMPInputs_techReport.csv
data/manProcScenarios/fraserMPInputs_varyAllocation.csv
data/manProcScenarios/fraserMPInputs_varyAllocationProdRange.csv
data/manProcScenarios/fraserMPInputs_varyAllocationVaryMixHCR.csv
data/manProcScenarios/fraserMPInputs_varyAllocation_noError.csv
data/nassDat/nassCUPars.csv
data/nassDat/nassCatchDatTrim.csv
data/nassDat/nassChumMCMCPars.csv
data/nassDat/nassChumMCMCPars_wAR.csv
data/nassDat/nassRecDatTrim.csv
data/opModelScenarios/fraserOMInputs_varyCorr.csv
data/opModelScenarios/fraserOMInputs_varyCorrAdjustBeta.csv
data/opModelScenarios/fraserOMInputs_varyCorrMultiHCR.csv
data/opModelScenarios/fraserOMInputs_varyCorrNoMort.csv
data/opModelScenarios/fraserOMInputs_varyCorrSensitivity.csv
data/opModelScenarios/nassOMInputs_ouImpacts.csv
data/opModelScenarios/nassOMInputs_ref.csv
data/recMatrix.rda
data/recPpns.rda
data/rickerParameters.rda
data/synchList.rda
man/agPlottingDF2.Rd
man/arrayMean.Rd
man/buildDataAgg.Rd
man/buildDataCU.Rd
man/calcCanEROU_fixedER.Rd
man/calcErr.Rd
man/calcObsCatch.Rd
man/calcRealCatch.Rd
man/calcSynchMetrics.Rd
man/calcTAC.Rd
man/calcTAC_fixedER.Rd
man/checkInteger.Rd
man/constrain.Rd
man/coordRadar.Rd
man/cuPlottingDF2.Rd
man/cv.Rd
man/dot-onUnload.Rd
man/exampleHCRList.Rd
man/extinctionCheck.Rd
man/fastLm.Rd
man/genCycle.Rd
man/genMean.Rd
man/genOutputList.Rd
man/genericRecoverySim.Rd
man/geoMean.Rd
man/getResiduals.Rd
man/getSRPars.Rd
man/getSRPars_randomSamp.Rd
man/getTau.Rd
man/infill.Rd
man/larkinModel.Rd
man/larkinParameters.Rd
man/mutate_when.Rd
man/mvLogisticLogProp.Rd
man/pipe.Rd
man/plotAgDot.Rd
man/plotAgTradeoff.Rd
man/plotCUDot.Rd
man/plotCUTradeoff.Rd
man/plotContTradeOffs.Rd
man/plotDiagCU.Rd
man/plotRadar.Rd
man/ppnAgeErr.Rd
man/ppnCatchErr.Rd
man/qHigh.Rd
man/qLow.Rd
man/quickLm.Rd
man/recMatrix.Rd
man/recPpns.Rd
man/recoverySim.Rd
man/rickerModel.Rd
man/rickerParameters.Rd
man/rickerSurvModel.Rd
man/sGenOptimum.Rd
man/sGenSolver.Rd
man/samSim.Rd
man/synchList.Rd
man/theme_sleekX.Rd
man/ungroupRowwiseDF.Rd
man/wtdCV.Rd
reports/changesToChumModel.md
reports/ecology.csl
reports/fraserRiverDoc.md
reports/inputParSummary.md
reports/ncChumDoc.md
reports/preamble-latex.tex
reports/refParameterValues.xlsx
samSim.Rproj
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/RcppExports.o
src/fastLm.cpp
src/fastLm.o
src/samSim.dll
src/samSim.so
src/samSimNEW.dll
test_samSim_generic.r
