sample_ASE: Sample ASE data
In Catalysta/ASEtestTools: ANEVA Dosage Outlier Test
Description
A sample of Allele Specific Expression (ASE) data from a single tissue sample from a GTEx v7 donor
for use with the short tutorial on the package README.
The data was produced using phASEr https://github.com/secastel/phaser
Usage
1
Format
A data frame with 5460 rows and 6 variables:
- GENE_ID
The Ensembl Gene ID
- TISSUE_ID
The tissue ID from GTEx. (Skeletal Muscle in this case)
- REF_COUNT
The number of RNA-seq reads from the highest expressed ASE-snp mapping to the reference allele of the gene
- ALT_COUNT
The number of RNA-seq reads from the highest expressed ASE-snp mapping to the alternative allele of the gene
- TOTAL_COUNT
The sum of REF_COUNT and ALT_COUNT
- NULL_RATIO
From phASEr, the expected value of ALT_COUNT/(ALT_COUNT + REF_COUNT)
Catalysta/ASEtestTools documentation built on Oct. 10, 2021, 7:44 a.m.
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Description
A sample of Allele Specific Expression (ASE) data from a single tissue sample from a GTEx v7 donor for use with the short tutorial on the package README. The data was produced using phASEr https://github.com/secastel/phaser
Usage
1 |
Format
A data frame with 5460 rows and 6 variables:
- GENE_ID
The Ensembl Gene ID
- TISSUE_ID
The tissue ID from GTEx. (Skeletal Muscle in this case)
- REF_COUNT
The number of RNA-seq reads from the highest expressed ASE-snp mapping to the reference allele of the gene
- ALT_COUNT
The number of RNA-seq reads from the highest expressed ASE-snp mapping to the alternative allele of the gene
- TOTAL_COUNT
The sum of REF_COUNT and ALT_COUNT
- NULL_RATIO
From phASEr, the expected value of ALT_COUNT/(ALT_COUNT + REF_COUNT)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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