getFdr: Calculate tail-area (Fdr) and local (fdr) false discovery...

In CenterForStatistics-UGent/reconsi: Resampling Collapsed Null Distributions for Simultaneous Inference

Calculate tail-area (Fdr) and local (fdr) false discovery rates, based on a certain null distribution

Description

Calculate tail-area (Fdr) and local (fdr) false discovery rates, based on a certain null distribution

Usage

getFdr(
  statObs,
  fitAll,
  fdr,
  p,
  p0,
  zValsDensObs,
  smoothObs,
  assumeNormal,
  fitObs,
  ...
)

Arguments

statObs	Vector of observed z-values
fitAll	The parameters of the estimated random null
fdr	local false discovery rate, already estimated
p	the number of hypotheses
p0	The estimated fraction of null hypotheses
zValsDensObs	estimated densities of observed test statistics
smoothObs	A boolean, should estimated observed densities of the test statistics be used in estimating the Fdr
assumeNormal	A boolean, should normality be assumed for the null distribution?
fitObs	The kernel density estimate object of all test statistics
...	more arguments, ignored

Value

A list with components

Fdr	Tail are false discovery rate
fdr	Local false discovery rate

CenterForStatistics-UGent/reconsi documentation built on Nov. 13, 2023, 2:04 a.m.