plotNull: Plot the obtained null distribution along with a histogram of...

In CenterForStatistics-UGent/reconsi: Resampling Collapsed Null Distributions for Simultaneous Inference

Plot the obtained null distribution along with a histogram of observed test statistics

Description

Plot the obtained null distribution along with a histogram of observed test statistics

Usage

plotNull(
  fit,
  lowColor = "yellow",
  highColor = "blue",
  idNull = NULL,
  nResampleCurves = length(fit$Weights),
  hSize = 0.5
)

Arguments

fit	an object returned by the reconsi() (or testDAA()) function
lowColor, highColor	The low and high ends of the colour scale
idNull	indices of known null taxa
nResampleCurves	The number of resampling null distributions to plot
hSize	A double, the size of the line of the collapsed null estimate

Value

a ggplot2 plot object

Examples

 p = 180; n = 50; B = 1e2
 #Low number of resamples keeps computation time down
 x = rep(c(0,1), each = n/2)
 mat = cbind(
 matrix(rnorm(n*p/10, mean = 5+x),n,p/10), #DA
 matrix(rnorm(n*p*9/10, mean = 5),n,p*9/10) #Non DA
 )
#Provide just the matrix and grouping factor, and test using the random null
fdrRes = reconsi(mat, x, B = B)
plotNull(fdrRes)

CenterForStatistics-UGent/reconsi documentation built on Nov. 13, 2023, 2:04 a.m.