build_basic_annotations: Fetch annotations
In CharlesJB/chipcompare: Compare multiple ChIP-Seq experiments.
Description
Usage
Details
Value
Examples
Description
get_basic_annotations fetch annotations from UCSC hg19 and from Fantom
Usage
1
Details
This function is meant to be run only to generate the GRangesList
object that will contain the general annotation. It should only be
used before building the package. The goal of this function is to
fetch the basic annotations from UCSC (genes, exons, TSS, TTR) and
enhancers from Fantom.
Value
A GRangesList object with a GRanges for every basic annotation.
Examples
1
2
3
4
## Not run:
build_basic_annotations()
## End(Not run)
CharlesJB/chipcompare documentation built on May 6, 2019, 9:58 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Details Value Examples
Description
get_basic_annotations fetch annotations from UCSC hg19 and from Fantom
Usage
1 |
Details
This function is meant to be run only to generate the GRangesList object that will contain the general annotation. It should only be used before building the package. The goal of this function is to fetch the basic annotations from UCSC (genes, exons, TSS, TTR) and enhancers from Fantom.
Value
A GRangesList object with a GRanges for every basic annotation.
Examples
1 2 3 4 | ## Not run:
build_basic_annotations()
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.