percent_overlap: Calculate the percentage between 2 GRanges objects.
In CharlesJB/chipcompare: Compare multiple ChIP-Seq experiments.
Description
Usage
Arguments
Value
Examples
Description
Calculate the percentage between 2 GRanges objects.
Usage
1
percent_overlap(qry, sbj)
Arguments
qry
Query. The percentage will be calculated relatively to this
object. Must of class GRanges.
sbj
Subject. Must be of class GRanges or GIntervalTree.
Value
The percentage of the query that overlaps the subject.
Examples
1
2
3
4
5
gr1 <- GRanges("chr1", IRanges(1,100))
gr2 <- GRanges("chr1", IRanges(40,140))
percent_overlap(gr1, gr2)
gri2 <- GIntervalTree(gr2)
percent_overlap(gr1, gr2)
CharlesJB/chipcompare documentation built on May 6, 2019, 9:58 a.m.
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Description Usage Arguments Value Examples
Description
Calculate the percentage between 2 GRanges objects.
Usage
1 | percent_overlap(qry, sbj)
|
Arguments
qry |
Query. The percentage will be calculated relatively to this
object. Must of class |
sbj |
Subject. Must be of class |
Value
The percentage of the query that overlaps the subject.
Examples
1 2 3 4 5 | gr1 <- GRanges("chr1", IRanges(1,100))
gr2 <- GRanges("chr1", IRanges(40,140))
percent_overlap(gr1, gr2)
gri2 <- GIntervalTree(gr2)
percent_overlap(gr1, gr2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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