CharlieCarpenter/tidy.micro: A Pipeline For Microbiome Analysis And Visualization

A package for microbiome (or other omics) data management, analysis, and visualizations. This package provides function to wrangle multiple OTU (or multiple omics) tables together with meta data into a "tidy" format. Create exploratory visualizations, calculate and test on diversity measures, model individual taxa, and, finally, create stacked bar charts based on taxa level model estimates.

install.packages("remotes")
remotes::install_github("CharlieCarpenter/tidy.micro")