phy: An OTU table of phylum level taxa counts
In CharlieCarpenter/tidy.micro: A Pipeline For Microbiome Analysis And Visualization
Description
Usage
Format
Source
Description
Infants who required mechanical ventilation had tracheal aspirates samples collected at 7, 14, and 21 days of age (+/- 48 hours). Infants who were mechanically ventilated and had at least one tracheal aspirate collected were included in this study. Subjects were required to be enrolled within 7 days of age. Bacterial profiles were determined by broad-range amplification and sequence analysis of 16S rRNA genes.
Usage
1
Format
A 15x75 data.frame
OTU_NameA character vector of phylum level OTU names
Lib namesThe following columns are the sequencing counts for each library with library names
Source
https://doi.org/10.1371/journal.pone.0170120
CharlieCarpenter/tidy.micro documentation built on Jan. 19, 2020, 6:28 p.m.
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Description Usage Format Source
Description
Infants who required mechanical ventilation had tracheal aspirates samples collected at 7, 14, and 21 days of age (+/- 48 hours). Infants who were mechanically ventilated and had at least one tracheal aspirate collected were included in this study. Subjects were required to be enrolled within 7 days of age. Bacterial profiles were determined by broad-range amplification and sequence analysis of 16S rRNA genes.
Usage
1 |
Format
A 15x75 data.frame
OTU_NameA character vector of phylum level OTU names
Lib namesThe following columns are the sequencing counts for each library with library names
Source
https://doi.org/10.1371/journal.pone.0170120
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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