| alpha_div | Alpha Diversity Calculations for tidy_micro |
| bb_bars | Create stacked bar charts based on beta binomial model... |
| bb_mods | Fit negative binomial models to each taxa within an OTU table |
| beta_div | Beta Diversity Calculations for tidy_micro |
| beta_heatmap | Create heatmaps of the supplied dissimilarity matrices |
| cla | An OTU table of class level taxa counts |
| cor_heatmap | Create correlation heatmaps of taxa and another continuous... |
| cor_rocky_mtn | Create Rocky Mountain plots from taxa relative abundance... |
| fam | An OTU table of family level taxa counts |
| met | A data set containing the clinical meta data of the subjects... |
| micro_alpha_reg | Linear regression on alpha diversities within a micro_set |
| micro_chisq | Run Chi-Squared tests for each taxa |
| micro_forest | Create forest plots from negative binomial taxa models |
| micro_heatmap | Create heatmaps of estiamted coefficients from negative... |
| micro_MiRKAT | A function to run MiRKAT within the tidy_micro format |
| micro_pca | Calculate and plot principle components |
| micro_PERMANOVA | A function to run PERMANOVA on tidi_micro data sets |
| micro_rank_sum | Run rank sum tests for each taxa within an OTU table |
| micro_rocky_mtn | Create Rocky Mountain plots from negative binomial taxa... |
| nb_bars | Create stacked bar charts based on negative binomial model... |
| nb_mods | Fit negative binomial models to each taxa within an OTU table |
| ord | An OTU table of order level taxa counts |
| otu_filter | A function to aggregate low prevalence, abundance, or... |
| pca_3d | Create 3d PCA plots |
| phy | An OTU table of phylum level taxa counts |
| ra_bars | Function to make stacked bar charts of taxa relative... |
| taxa_boxplot | Function to make boxplots of taxa counts or relative... |
| taxa_summary | Summarize the information |
| three_mode | Create Three Mode PCA and PCoA plots |
| tidy_micro | A function to merge multiple OTU tables and meta data into a... |
