README.md

In ChiLiubio/mecodev: A set of extended classes based on the microeco package

mecodev

A set of extended classes based on the microeco package

Install

Install mecodev from github.

# If devtools package is not installed, first install it
install.packages("devtools")
devtools::install_github("ChiLiubio/mecodev")

If the installation from github is failed online, download the package first, then install it locally.

devtools::install_local("mecodev-master.zip")

Tutorial

See the mecodev part of tutorial (https://chiliubio.github.io/microeco_tutorial/mecodev-package.html).

Citation

Chi Liu, Yaoming Cui, Xiangzhen Li, Minjie Yao, microeco: an R package for data mining in microbial community ecology, FEMS Microbiology Ecology, Volume 97, Issue 2, February 2021, fiaa255. https://doi.org/10.1093/femsec/fiaa255

Contributing

We welcome any contribution ! Any idea/suggestion will be considered. By participating in this project you agree to abide by the terms outlined in the Contributor Code of Conduct.

References

• Zhang et al. Local community assembly mechanisms shape soil bacterial β diversity patterns along a latitudinal gradient. Nat Commun 11, 5428 (2020); .
• Liu et al. microeco: an R package for data mining in microbial community ecology, FEMS Microbiology Ecology, Volume 97, Issue 2, February 2021, fiaa255.
• Li et al. An expectation-maximization algorithm enables accurate ecological modeling using longitudinal microbiome sequencing data. Microbiome, (2019) 7:118; .

ChiLiubio/mecodev documentation built on Jan. 20, 2025, 8:05 a.m.