anota2seqGetResidOutlierTest: Retrieve residOutlierTest

Description Usage Arguments Value See Also Examples

Description

Retrieves the output of the anota2seqResidualOutlierTest function from the Anota2seqDataSet.

Usage

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anota2seqGetResidOutlierTest(object)

## S4 method for signature 'Anota2seqDataSet'
anota2seqGetResidOutlierTest(object)

Arguments

object

An Anota2seqDataSet.

Value

A list with the following items:

See Also

anota2seqResidOutlierTest

Examples

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data(anota2seq_data)
Anota2seqDataSet <- anota2seqDataSetFromMatrix(
    dataP = anota2seq_data_P[1:100,],
    dataT = anota2seq_data_T[1:100,],
    phenoVec = anota2seq_pheno_vec,
    dataType = "RNAseq",
    normalize = TRUE)
# Run QC, it is mandatory for anota2seqResidualOutlierTest
Anota2seqDataSet <- anota2seqPerformQC(Anota2seqDataSet)
# Run the Residual outlier testing
Anota2seqDataSet <- anota2seqResidOutlierTest(Anota2seqDataSet)

#Get resdidual outlier testing
rot <- anota2seqGetResidOutlierTest(Anota2seqDataSet)

ChrOertlin/anota2seq documentation built on Aug. 4, 2021, 2:17 p.m.