Man pages for ChristofSeiler/CytoGLMM
Conditional Differential Analysis for Flow and Mass Cytometry Experiments
| cyto_check | Check if input to cytoxxx function have errors |
| cytoflexmix | Logistic mixture regression |
| cytoglm | Fit GLM with bootstrap resampling |
| cytoglmm | Fit GLMM with method of moments |
| cytogroup | Group-specific fixed effects model |
| cytostab | Evaluate parameter stability with respect to gating sheme |
| generate_data | Generate dataset for vignettes and simulation studies |
| glmm_moment | Generalized linear mixed model with maximum likelihood |
| is_unpaired | Check if samples match or paired on condition |
| plot_coeff | Helper function to plot regression coeffcient |
| plot.cytoflexmix | Plot all components of mixture regression |
| plot.cytoglm | Plot bootstraped coefficients |
| plot.cytoglmm | Plot fixded coefficients of random effects model |
| plot.cytogroup | Plot fixded coefficients of group-specific fixed effects... |
| plot_heatmap | Heatmap of median marker expression |
| plot_lda | LDA on marker expression |
| plot_mds | MDS on median marker expression |
| plot_model_selection | Plot model selection to choose number optimal number of... |
| plot_prcomp | Plot PCA of subsampled data using ggplot |
| print.cytoglm | Extact and print bootstrap GLM fit |
| print.cytoglmm | Extact and print GLMM fit |
| remove_samples | Remove samples based on low cell counts |
| summary.cytoglm | Extact and calculate p-values of bootstrap GLM fit |
| summary.cytoglmm | Extact and calculate p-values of GLMM fit |
