cyto_check | Check if input to cytoxxx function have errors |
cytoflexmix | Logistic mixture regression |
cytoglm | Fit GLM with bootstrap resampling |
cytogroup | Group-specific fixed effects model |
cytostab | Evaluate parameter stability with respect to gating sheme |
generate_data | Generate dataset for vignettes and simulation studies |
is_unpaired | Check if samples match or paired on condition |
plot_coeff | Helper function to plot regression coeffcient |
plot.cytoflexmix | Plot all components of mixture regression |
plot.cytoglm | Plot bootstraped coefficients |
plot.cytogroup | Plot fixded coefficients of group-specific fixed effects... |
plot_heatmap | Heatmap of median marker expression |
plot_lda | LDA on marker expression |
plot_mds | MDS on median marker expression |
plot_model_selection | Plot model selection to choose number optimal number of... |
plot_prcomp | Plot PCA of subsampled data using ggplot |
print.cytoglm | Extact and print bootstrap GLM fit |
remove_samples | Remove samples based on low cell counts |
summary.cytoglm | Extact and calculate p-values of bootstrap GLM fit |
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