summary.cytoglm: Extact and calculate p-values of bootstrap GLM fit

In ChristofSeiler/CytoGLMM: Conditional Differential Analysis for Flow and Mass Cytometry Experiments

Extact and calculate p-values of bootstrap GLM fit

Description

Extact and calculate p-values of bootstrap GLM fit

Usage

## S3 method for class 'cytoglm'
summary(object, method = "BH", ...)

Arguments

object	A cytoglm class
method	Multiple comparison adjustment method
...	Other parameters

Value

tibble data frame

Examples

set.seed(23)
df <- generate_data()
protein_names <- names(df)[3:12]
df <- dplyr::mutate_at(df, protein_names, function(x) asinh(x/5))
glm_fit <- CytoGLMM::cytoglm(df,
                             protein_names = protein_names,
                             condition = "condition",
                             group = "donor",
                             num_boot = 10) # in practice >=1000
summary(glm_fit)

ChristofSeiler/CytoGLMM documentation built on April 21, 2023, 3:38 a.m.