GSAA: GSAA
In ChristophRau/GSAA: Gene Set Association Analysis
GSAA R Documentation
GSAA
Description
Performs Gene Set Association Analysis, a weighted version of GSEA using GWAS ideas.
Usage
GSAA(input,GOInfo,qval_threshold=.05)
Arguments
input
matrix with gene names as column names, group names as row names, and strengths as entries
GOInfo
Gene/GO Term Incidence Matrix (eqivalent to a SNP genotype file)
qval_threshold
FDR threshold for significance. Will take either 0-1 or 0-100 as inputs
Value
Sig_Results
Significant GSAA results
Author(s)
Christoph Rau
See Also
RUN_GSAA,calculateIncidenceTable
ChristophRau/GSAA documentation built on March 2, 2023, 5:29 a.m.
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| GSAA | R Documentation |
GSAA
Description
Performs Gene Set Association Analysis, a weighted version of GSEA using GWAS ideas.
Usage
GSAA(input,GOInfo,qval_threshold=.05)
Arguments
input |
matrix with gene names as column names, group names as row names, and strengths as entries |
GOInfo |
Gene/GO Term Incidence Matrix (eqivalent to a SNP genotype file) |
qval_threshold |
FDR threshold for significance. Will take either 0-1 or 0-100 as inputs |
Value
Sig_Results |
Significant GSAA results |
Author(s)
Christoph Rau
See Also
RUN_GSAA,calculateIncidenceTable
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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