View source: R/calculateIncidenceTable.R
calculateIncidenceTable | R Documentation |
Calculates a Gene/GO Term incidence Matrix (equivalent to a SNP Genotype file for a GWAS)
calculateIncidenceTable(input,ensembl_dataset="mmusculus_gene_ensembl",mart="illumina_mouseref_8_v2",GO_Member_Threshold=10)
input |
matrix with gene names as column names, group names as row names, and strengths as entries |
ensembl_dataset |
Which biomart will be used. Species Specific. |
mart |
which specific dataset within the biomart will be used. Platform Specific. |
GO_Member_Threshold |
Threshold for eliminating GO Terms with fewer than this many members from the incidence table (equivalent to a Minor Allele Frequency Filter in a GWAS) |
Incidence_Table |
The Incidence_Table of genes and GO Terms (equivalent to a genotype file in GWAS) |
Christoph Rau
GSAA
,matchkeep
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