Files in ClemensKohl/APL
Association Plots
.Rbuildignore
.github/.gitignore
.github/workflows/pkgdown.yaml
.gitignore
.lintr
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/CA.R
R/apl.R
R/constructor.R
R/convert.R
R/generic_methods.R
R/import_packages.R
R/plot.R
R/utils-pipe.R
README.md
_pkgdown.yml
inst/CITATION
inst/python/python_svd.py
man/apl.Rd
man/apl_coords.Rd
man/apl_ggplot.Rd
man/apl_plotly.Rd
man/apl_score.Rd
man/apl_topGO.Rd
man/as.cacomp.Rd
man/as.list-cacomp-method.Rd
man/ca_3Dplot.Rd
man/ca_biplot.Rd
man/ca_coords.Rd
man/cacomp-class.Rd
man/cacomp.Rd
man/cacomp_names.Rd
man/cacomp_slot.Rd
man/check_cacomp.Rd
man/comp_std_residuals.Rd
man/elbow_method.Rd
man/figures/fig_AP.png
man/is.empty.Rd
man/pick_dims.Rd
man/pipe.Rd
man/plot_enrichment.Rd
man/recompute.Rd
man/rm_zeros.Rd
man/runAPL.Rd
man/run_APL.Rd
man/run_cacomp.Rd
man/scree_plot.Rd
man/show.cacomp.Rd
man/subset_dims.Rd
man/var_rows.Rd
tests/testthat.R
tests/testthat/test-CA.R
tests/testthat/test-apl.R
tests/testthat/test-convert.R
tests/testthat/testdata/AP_coordinates/example1/AP_coordinates_genes.txt
tests/testthat/testdata/AP_coordinates/example1/AP_coordinates_samples.txt
tests/testthat/testdata/AP_coordinates/example1/gene_ranking.txt
tests/testthat/testdata/AP_coordinates/example1/genes_order.txt
tests/testthat/testdata/AP_coordinates/example2/AP_coordinates_genes.txt
tests/testthat/testdata/AP_coordinates/example2/AP_coordinates_samples.txt
tests/testthat/testdata/AP_coordinates/example2/gene_ranking.txt
tests/testthat/testdata/AP_coordinates/example2/genes_order.txt
tests/testthat/testdata/AP_coordinates/example3/AP_coordinates_genes.txt
tests/testthat/testdata/AP_coordinates/example3/AP_coordinates_samples.txt
tests/testthat/testdata/AP_coordinates/example3/gene_ranking.txt
tests/testthat/testdata/AP_coordinates/example3/genes_order.txt
tests/testthat/testdata/AP_coordinates/input_data.txt
tests/testthat/testdata/AP_coordinates/notes.txt
tests/testthat/testdata/countries.rda
tests/testthat/testdata/input_data.tsv
tests/testthat/testdata/smoke.rda
tests/testthat/testdata/smoke_scRNAseq.rda
vignettes/.gitignore
vignettes/APL.Rmd
