Files in ClemensKohl/APL

Association Plots

.Rbuildignore

.github/.gitignore

.github/workflows/pkgdown.yaml

.gitignore

DESCRIPTION

LICENSE.md

NAMESPACE

NEWS.md R/CA.R R/apl.R R/constructor.R R/convert.R R/generic_methods.R R/import_packages.R R/plot.R R/utils-pipe.R README.md

_pkgdown.yml

inst/CITATION

inst/python/python_svd.py

man/apl.Rd man/apl_coords.Rd man/apl_ggplot.Rd man/apl_plotly.Rd man/apl_score.Rd man/apl_topGO.Rd man/as.cacomp.Rd man/as.list-cacomp-method.Rd man/ca_3Dplot.Rd man/ca_biplot.Rd man/ca_coords.Rd man/cacomp-class.Rd man/cacomp.Rd man/cacomp_names.Rd man/cacomp_slot.Rd man/check_cacomp.Rd man/comp_std_residuals.Rd man/elbow_method.Rd

man/figures/fig_AP.png

man/is.empty.Rd man/pick_dims.Rd man/pipe.Rd man/plot_enrichment.Rd man/recompute.Rd man/rm_zeros.Rd man/runAPL.Rd man/run_cacomp.Rd man/scree_plot.Rd man/show.cacomp.Rd man/subset_dims.Rd man/var_rows.Rd tests/testthat.R tests/testthat/test-CA.R tests/testthat/test-apl.R tests/testthat/test-convert.R

tests/testthat/testdata/AP_coordinates/example1/AP_coordinates_genes.txt

tests/testthat/testdata/AP_coordinates/example1/AP_coordinates_samples.txt

tests/testthat/testdata/AP_coordinates/example1/gene_ranking.txt

tests/testthat/testdata/AP_coordinates/example1/genes_order.txt

tests/testthat/testdata/AP_coordinates/example2/AP_coordinates_genes.txt

tests/testthat/testdata/AP_coordinates/example2/AP_coordinates_samples.txt

tests/testthat/testdata/AP_coordinates/example2/gene_ranking.txt

tests/testthat/testdata/AP_coordinates/example2/genes_order.txt

tests/testthat/testdata/AP_coordinates/example3/AP_coordinates_genes.txt

tests/testthat/testdata/AP_coordinates/example3/AP_coordinates_samples.txt

tests/testthat/testdata/AP_coordinates/example3/gene_ranking.txt

tests/testthat/testdata/AP_coordinates/example3/genes_order.txt

tests/testthat/testdata/AP_coordinates/input_data.txt

tests/testthat/testdata/AP_coordinates/notes.txt

tests/testthat/testdata/countries.rda

tests/testthat/testdata/input_data.tsv

tests/testthat/testdata/smoke.rda

tests/testthat/testdata/smoke_scRNAseq.rda

vignettes/.gitignore

vignettes/APL.Rmd

ClemensKohl/APL documentation built on Feb. 6, 2024, 1:28 a.m.