coefModelCountDetectBinREY: Datasets Containing MCMC iterations for Various Registered...

In ClementCalenge/caperpyogm: Estimation of the Number of Male Capercaillie in the Pyrenees Mountains

Description

These datasets are objects of class "mcmc.list" containing the result of the fit of registered models (see Details) to our lek count dataset (lekcounts).

Usage

data("coefModelCountDetectBinREY")

data("coefModelCountDetectBin")

data("coefModelCountDetectBetaBinREY")

data("coefModelm281")

Format

Objects of class "mcmc.list".

Details

Each dataset contains the MCMC iterations obtained by fitting a registered model (see help(modelCountDetectBinREY) for a list of registered model) to our dataset lekcount. See examples below for a description of the process that led to these datasets. More precisely:

coefModelCountDetectBin contains the results of the fit of the model modelCountDetectBin (see ?modelCountDetectBin), using as periods the two-years periods (2010-2011, 2012-2013, etc.)

coefModelCountDetectBinREY contains the results of the fit of the model modelCountDetectBinREY (see ?modelCountDetectBinREY), using as periods the two-years periods.

coefModelm281 contains the results of the fit of the same model modelCountDetectBinREY after having removed lek 281 frome the dataset. This lek is an outlier, and refitting the model without this lek allows to assess its effect on the estimates of the model (see the vignette).

coefModelCountDetectBetaBinREY contains the results of the fit of the model modelCountDetectBetaBinREY (see ?modelCountDetectBetaBinREY), using as periods the two-years periods.

Source

The original Dataset has been kindly provided by the Observatoire des Galliformes de Montagne:

Observatoire des Galliformes de Montagne. 90 impasse des daudes 74320 Sevrier, France.

References

Calenge C., Menoni E., Milhau B., Foulche K, Chiffard J., Marchandeau S. (in prep.). The participatory monitoring of the capercaillie in the French Pyrenees.

Examples

## We demonstrate how we calculated coefModelCountDetectBinREY,
## but the process is the same for other datasets

## We work on the dataset lekcounts
head(lekcounts)

## We prepare the dataset to fit the model with JAGS
dataList <- dataCount2jags(lekcounts$lek, lekcounts$period,
                           lekcounts$nbobs, lekcounts$nbmales,
                           lekcounts$gr, as.numeric(factor(lekcounts$type)),
                           lekcounts$natun, lekcounts$year)
dataList

## We then fit the model. WARNING!!! THIS COMMAND IS VERY SLOW AND
## CAN TAKE SEVERAL HOURS
## Not run: 
coefModelCountDetectBinREY <- fitModelCount(dataList, "modelCountDetectBinREY")

## End(Not run)

## To save time for the user, we have stored the result of this
## command in the dataset coefModelCountDetectBinREY.
## The same approach was used for other datasets.

ClementCalenge/caperpyogm documentation built on Sept. 14, 2021, 4:14 p.m.