roedeer3sites-package: Habitat Selection by the Roe Deer in three French Study Sites

Description Details Author(s) Examples

Description

Companion package to the article by Gaudry et al. on habitat selection by the roe deer in three Study sites.

Details

Package: roedeer3sites
Type: Package
Version: 1.0
Date: 2015-02-20
License: GPL (>= 2)

This package contains all the code used to analyse the GPS data collected on the roe deer at Chize, la Petite Pierre and Trois-Fontaines. The code is stored in the example section of the help pages of the objects contained in this package:

HS3Sites is the dataset analyzed in the paper (i.e. habitat use and availability)

coefficientsModel1 is a dataset containing the vectors of parameters sampled in the posterior distribution for the model f1 (same habitat selection in all sites). The R and JAGS code used to fit the model is presented in the example section of the help page of this dataset (requires the R package rjags).

coefficientsModel2 is a dataset containing the vectors of parameters sampled in the posterior disttribution for the model f2 (habitat selection different in the three sites). The R and JAGS code used to fit the model is presented in the example section of the help page of this dataset. Note that this section also contains the code used to fit the model to the dataset after removal of three individuals suspected to have a strong influence on the parameters, as well as the comparison between the posterior distribution fit to the full dataset.

simulateNewData is the function that was used to check the goodness of fit of our model by simulating one dataset for each sampled vector of parameters. The example section of this help page contains the R code used for this check.

marginalityTriangle is the function used to plot the observed marginality vectors on the ecological triangle. The example section of this help page contains the R code used to draw figure 3 of the paper.

marginalityDots is the function used to plot the posterior distribution of the marginality vectors in the ecological triangle. The example section of this help page contains the R code used to draw figure 4 of the paper.

triangleImage is the function used to plot an image on the ecological triangle. The example section of this help page contains the R code used to draw figure 5 of the paper.

Author(s)

William Gaudry, Clement Calenge, Sonia Said, Jean-Michel Gaillard

Maintainer: Clement Calenge <clement.calenge@oncfs.gouv.fr>

Examples

1
## See the help page of the functions

ClementCalenge/roedeer3sites documentation built on May 16, 2019, 6:58 p.m.