DrugResistance: Drug Resistance Identified for Pseudomonas Aeruginosa From...
In ClorisZhou2000/MDRClassifier: Multi-Drug Resistance Classifier
Description
Usage
Format
Source
Examples
Description
The experiment identifying the whole genome seqeunce of 1984 Pseudomonas aeruginosa isolates.
Subsequent data cleaning and RGI blast process obtain their ARO name, drug class,
antimicrobial agents, and resistant mechanism information conducted in 2021.
Usage
1
Format
A matrix with columns:
- Sample ID
The sample ID of each isolate
- ARO name
The antimicrobial resistant gene predicted for each sample
- Drug Class
The name of the drug class that the sample resistant
- Antimicrobial Agent
The antimicrobial agent of each sample predicted from the whole genome sequence
- Resistance Mechanism
The resistance mechanismm that sample used to develop resistance
Source
PHAC’s National Microbiology Laboratory (NML)
https://www.canada.ca/en/public-health/programs/national-microbiology-laboratory.html
Examples
1
2
3
4
## Not run:
DrugResistance
## End(Not run)
ClorisZhou2000/MDRClassifier documentation built on Dec. 17, 2021, 2:06 p.m.
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Description Usage Format Source Examples
Description
The experiment identifying the whole genome seqeunce of 1984 Pseudomonas aeruginosa isolates. Subsequent data cleaning and RGI blast process obtain their ARO name, drug class, antimicrobial agents, and resistant mechanism information conducted in 2021.
Usage
1 |
Format
A matrix with columns:
- Sample ID
The sample ID of each isolate
- ARO name
The antimicrobial resistant gene predicted for each sample
- Drug Class
The name of the drug class that the sample resistant
- Antimicrobial Agent
The antimicrobial agent of each sample predicted from the whole genome sequence
- Resistance Mechanism
The resistance mechanismm that sample used to develop resistance
Source
PHAC’s National Microbiology Laboratory (NML) https://www.canada.ca/en/public-health/programs/national-microbiology-laboratory.html
Examples
1 2 3 4 | ## Not run:
DrugResistance
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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