classifyAllMDR: Classify the multi-drug resistance for multiple samples

In ClorisZhou2000/MDRClassifier: Multi-Drug Resistance Classifier

Description

A function that classify the multi-drug resistances of all samples in the csv file given the all drug resistances information from RGI prediction.

Usage

classifyAllMDR(drug_resistance, antimicrobial_agents)

Arguments

drug_resistance	A list with each row representing each sample IDs and one of the columns is the string of drugs that the sample resistant.
antimicrobial_agents	The string of the column name specifying sample's antimicrobial agents.

Value

Returns a dataframe with each row name representing the sample ID and its column representing the MDR category.

Examples

# Example 2
# Using DrugResistance dataset available with package
dim(DrugResistance)

#classify the category of all samples' multi-drug resistance
resultsExample2 <- classifyAllMDR(drug_resistance = DrugResistance,
                               antimicrobial_agents = 'Antimicrobial.Agent')
# To obtain value from results
resultsExample2

ClorisZhou2000/MDRClassifier documentation built on Dec. 17, 2021, 2:06 p.m.