cite_RNAseqGSEA: RNAseq GSEA methods citation

In CoarfaBCM/derecksLabTools: A tool belt for my work at Coarfa lab Baylor College of Medicine

RNAseq GSEA methods citation

Description

Prints methods used for RNAseq and GSEA analysis, allows for variable interpolation to print a custom message.

Usage

cite_RNAseqGSEA(
  fold_changes = 1.5,
  normalisation_type = "LRT_ruvR_upperquartile"
)

Arguments

fold_changes	[type: vector<numeric>, default: 1.5] A vector of numerics, get concatenated and formatted for printing.
normalisation_type	[type: character, default: "LRT_ruvR_upperquartile"] Either "LRT_ruvR_upperquartile" or "TMM", depends on if replicates could be used for analysis and normalisation type.

Examples

cite_RNAseqGSEA(fold_changes = c(1.5, 2.0), normalisation_type = "TMM")

CoarfaBCM/derecksLabTools documentation built on April 3, 2022, 10:29 p.m.