combatRNAseq-class: 'S4' class; does sva::ComBat_seq batch correction

In CoarfaBCM/derecksLabTools: A tool belt for my work at Coarfa lab Baylor College of Medicine

S4 class; does sva::ComBat_seq batch correction

Description

S4 class; does sva::ComBat_seq batch correction

Slots

corrected

data.table.

batches

list.

batch_map

data.table.

qc_plots

list.

Author(s)

Dereck de Mezquita

This class with its constructor makes it easy to do batch correction. Simply provide the list of data.tables to the class instantiator. This will return the corrected dataset along with PCA plots of before and after in a list.

The data.tables must have the columns:

1. GeneID

2. GeneBiotype

3. GeneSymbol

CoarfaBCM/derecksLabTools documentation built on April 3, 2022, 10:29 p.m.