Man pages for CogDisResLab/BioPathNet
BioPathNet: Three Pod Analysis System
| BPNList | Construct a BPNList object |
| BPNList-class | BPNList-class: The BioPathNet Core Class |
| do_enrichr_pod | Perform the EnrichR Analysis |
| do_gsea_pod | Perform the Geneset Enrichment Analysis |
| do_leading_pod | Perform Leading Edge Gene Analysis |
| EnrichRResult | Construct an EnrichRResult object |
| EnrichRResult-class | EnrichRResult-class: Class storing EnrichR Results |
| get_revigo_output | Perform Revigo enrichment analysis |
| GSEAResult | Construct a GSEAResult Object |
| GSEAResult-class | GSEAResult-class: Class storing GSEA Results |
| hsapiens | List of pathways and associated genes in homo sapiens |
| iLINCSResult-class | iLINCSResult-class: Class storing iLINCS Results |
| IntegratedResult-class | IntegratedResult-class: Class containing Integrated results |
| leading_edge | Extract Leading Edge Genes from GSEA Results |
| LEResult | Construct an LEResult object |
| LEResult-class | LEResult-class: Class containing Leading Edge Analysis... |
| load_pathways | Load Pathways data |
| mmusculus | List of pathways and associated genes in mus musculus |
| prepare_data | Prepare the data for downstream analysis |
| RevigoResult-class | RevigoResult-class: Class containing results from Revigo |
| rnorvegicus | List of pathways and associated genes in rattus norvegicus |
