EnrichRResult-class: EnrichRResult-class: Class storing EnrichR Results

In CogDisResLab/BioPathNet: BioPathNet: Three Pod Analysis System

EnrichRResult-class: Class storing EnrichR Results

Description

This class stores the input parameters and results of the Gene Set Enrichment Analysis.

Value

an object of class EnrichRResult

Slots

alpha

numeric. The Alpha threshold for significance

threshold_up

numeric. The logfc threshold for up-regulated genes

threshold_down

numeric. The logfc threshold for down-regulated genes

upregulated_genes

tbl_df. The up-regulated genes from the input DEG tibble

downregulated_genes

tbl_df. The down-regulated genes from the input DEG tibble

dbs_used

character. A vector of the databases used from enrichR

up_enrichr

tbl_df. Enriched pathways in up-regulated genes

down_enrichr

tbl_df. Enriched pathways in down-regulated genes

sig_up_enrichr

tbl_df. Significant enriched pathways in up-regulated genes

sig_down_enrichr

tbl_df. Significant enriched pathways in down-regulated genes

num_upreg

numeric. Number of up-regulated genes

num_downreg

numeric. Number of down-regulated genes

num_up_enrichr

numeric. Number of enriched pathways in up-regulated genes

num_down_enrichr

numeric. Number of enriched pathways in down-regulated genes

num_sig_up_enrichr

numeric. Number of significant enriched pathways in up-regulated genes

num_sig_down_enrichr

numeric. Number of significant enriched pathways in down-regulated genes

empty

logical. A simple check for whether or not the object is empty

Examples

TRUE

CogDisResLab/BioPathNet documentation built on June 29, 2023, 2:28 p.m.