BPNList-class: BPNList-class: The BioPathNet Core Class

In CogDisResLab/BioPathNet: BioPathNet: Three Pod Analysis System

BPNList-class: The BioPathNet Core Class

Description

This class takes care of the entire analysis infrastructure of the BioPathNet analysis. This class is created with inputting a list of differentially expressed genes and then stores the subsequently generated results.

Value

An object of class BPNList

Slots

input

tbl_df. A tibble with Two columns of gene names and logfc values and optionally a p-value column

gsea

GSEAResult. An instance of GSEAResult-class class storing the results GSEA Analysis

enrichr

EnrichRResult. An instance of EnrichRResult-class class storing the results EnrichR Analysis

ilincs

iLINCSResult. An instance of iLINCSResult-class class storing the results iLINCS Analysis

leading

LEResult. An instance of LEResult-class class storing the results Leading Edge Analysis

revigo

RevigoResult. An instance of RevigoResult-class class storing the results Revigo Analysis

integrated

IntegratedResult. An instance of IntegratedResult-class class storing the results after integrating the three components

Examples

TRUE

CogDisResLab/BioPathNet documentation built on June 29, 2023, 2:28 p.m.