Files in CollinErickson/CGGP

Composite Grid Gaussian Processes

.Rbuildignore

.gitattributes

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.gitignore

.travis.yml

CGGP.Rproj

DESCRIPTION

NAMESPACE

NEWS.md R/CGGP.R R/CGGP_S3_methods.R R/CGGP_append_fs.R R/CGGP_calc_lS_cholS_valo_etc.R R/CGGP_calc_supp_pw_sigma2_Sti.R R/CGGP_corr_fs.R R/CGGP_create_fs.R R/CGGP_fastcalcassist_fs.R R/CGGP_fit_fs.R R/CGGP_fitwithonlysupp.R R/CGGP_gneglogpost.R R/CGGP_impute_fs.R R/CGGP_neglogpost.R R/CGGP_plot.R R/CGGP_postvarcalc.R R/CGGP_pred_fs.R R/CGGP_predwithonlysupp.R R/CGGP_sharedfunctions.R R/RcppExports.R README.Rmd README.md

codecov.yml

cran-comments.md man/CGGP.Rd man/CGGP_internal_CorrMatCauchy.Rd man/CGGP_internal_CorrMatCauchySQ.Rd man/CGGP_internal_CorrMatCauchySQT.Rd man/CGGP_internal_CorrMatGaussian.Rd man/CGGP_internal_CorrMatMatern32.Rd man/CGGP_internal_CorrMatMatern52.Rd man/CGGP_internal_CorrMatPowerExp.Rd man/CGGP_internal_CorrMatWendland0.Rd man/CGGP_internal_CorrMatWendland1.Rd man/CGGP_internal_CorrMatWendland2.Rd man/CGGP_internal_MSEpredcalc.Rd man/CGGP_internal_calcMSE.Rd man/CGGP_internal_calcMSEde.Rd man/CGGP_internal_calcpw.Rd man/CGGP_internal_calcpwanddpw.Rd man/CGGP_internal_gneglogpost.Rd man/CGGP_internal_neglogpost.Rd man/CGGP_internal_set_corr.Rd man/CGGPappend.Rd man/CGGPcreate.Rd man/CGGPfit.Rd man/CGGPplotblocks.Rd man/CGGPplotblockselection.Rd man/CGGPplotcorr.Rd man/CGGPplotheat.Rd man/CGGPplothist.Rd man/CGGPplotsamplesneglogpost.Rd man/CGGPplotslice.Rd man/CGGPplottheta.Rd man/CGGPplotvariogram.Rd man/CGGPpred.Rd man/CGGPvalplot.Rd man/CGGPvalstats.Rd man/plot.CGGP.Rd man/print.CGGP.Rd man/rcpp_fastmatclcr.Rd man/rcpp_fastmatclcranddclcr.Rd man/rcpp_gkronDBS.Rd man/rcpp_kronDBS.Rd man/valplot.Rd man/valstats.Rd scratch/CGGP_corr_nug_fs.R scratch/CGGP_impute_fs.R

scratch/ExternalComparison/ExComp1_completed.rds

scratch/ExternalComparison/ExComp3/object.rds

scratch/ExternalComparison/ExComp3a_completed.rds

scratch/ExternalComparison/ExComp5TS_done.rds

scratch/ExternalComparison/ExComp5_almostall.rds

scratch/ExternalComparison/ExComp6_almostall.rds

scratch/ExternalComparison/ExternalCompExpResults.Rmd scratch/ExternalComparison/ExternalComparer1.R scratch/ExternalComparison/ExternalComparer2.R scratch/ExternalComparison/ExternalComparer3.R scratch/ExternalComparison/ExternalComparer4.R

scratch/ExternalComparison/ExternalComparer4.sh

scratch/ExternalComparison/ExternalComparer4bass.R scratch/ExternalComparison/ExternalComparer5.R

scratch/ExternalComparison/ExternalComparer5.sh

scratch/ExternalComparison/ExternalComparer5TS.R

scratch/ExternalComparison/ExternalComparer5TS.sh

scratch/ExternalComparison/ExternalComparer6.R

scratch/ExternalComparison/ExternalComparer6.sh

scratch/ExternalComparison/ExternalComparer6Results.Rmd

scratch/ExternalComparison/ExternalComparer6Results.html

scratch/ExternalComparison/ExternalComparerMO1.R scratch/ExternalComparison/scratch_howtouse_laGP.R scratch/ExternalComparison/scratchcompare.R scratch/InternalComparison/ComparerRun1.R scratch/InternalComparison/ComparerRun2.R

scratch/InternalComparison/ComparerRun2_completed.rds

scratch/InternalComparison/ComparerRun2_results.R scratch/InternalComparison/ComparerRun3.R

scratch/InternalComparison/ComparerRun3.sh

scratch/InternalComparison/ComparerRun4.R

scratch/InternalComparison/ComparerRun4.sh

scratch/InternalComparison/ComparerRun4_completed.rds

scratch/InternalComparison/ComparerRun4_completed_SQTfixed.rds

scratch/InternalComparison/ComparerRun4b_completed.rds

scratch/InternalComparison/ComparerRun5.R

scratch/InternalComparison/ComparerRun5.sh

scratch/InternalComparison/ComparerRun5_completed.rds

scratch/InternalComparison/ComparerRun6.R

scratch/InternalComparison/ComparerRun6.sh

scratch/InternalComparison/ComparerRun6_object_328_of_360_maybebadfit.rds

scratch/InternalComparison/ComparerRun7.R

scratch/InternalComparison/ComparerRun7.sh

scratch/InternalComparison/ComparerRun7_completed.rds

scratch/InternalComparison/Comparison3_completed.rds

scratch/InternalComparison/InternalComparisonExperiment.Rmd

scratch/InternalComparison/TrialRun1-object.rds

scratch/InternalComparison/TrialRun1-outcleandf.csv

scratch/InternalComparison/TrialRun1.R scratch/OldScratch/BackupBeforeBigChanges20190310/R/RcppExports.R scratch/OldScratch/BackupBeforeBigChanges20190310/R/SGGP.R scratch/OldScratch/BackupBeforeBigChanges20190310/R/SGGP_S3_methods.R scratch/OldScratch/BackupBeforeBigChanges20190310/R/SGGP_append_fs.R scratch/OldScratch/BackupBeforeBigChanges20190310/R/SGGP_corr_fs.R scratch/OldScratch/BackupBeforeBigChanges20190310/R/SGGP_create_fs.R scratch/OldScratch/BackupBeforeBigChanges20190310/R/SGGP_fastcalcassist_fs.R scratch/OldScratch/BackupBeforeBigChanges20190310/R/SGGP_fit_fs.R scratch/OldScratch/BackupBeforeBigChanges20190310/R/SGGP_fitwithonlysupp.R scratch/OldScratch/BackupBeforeBigChanges20190310/R/SGGP_plot.R scratch/OldScratch/BackupBeforeBigChanges20190310/R/SGGP_pred_fs.R scratch/OldScratch/BackupBeforeBigChanges20190310/R/SGGP_predwithonlysupp.R scratch/OldScratch/BackupBeforeBigChanges20190310/R/SGGP_speedup_gneglogpost.R scratch/OldScratch/BackupBeforeBigChanges20190310/R/SGGP_speedup_neglogpost.R scratch/OldScratch/BackupBeforeBigChanges20190310/R/SGGP_speedup_postvarcalc.R scratch/OldScratch/BackupBeforeBigChanges20190310/R/SGGP_speedup_returnthings.R scratch/OldScratch/BackupBeforeBigChanges20190310/R/SGGP_useful.R

scratch/OldScratch/BackupBeforeBigChanges20190310/src/RcppExports.cpp

scratch/OldScratch/BackupBeforeBigChanges20190310/src/specialkronfunctions.cpp

scratch/OldScratch/BackupBeforeBigChanges20190310/src/testing_C_function.cpp

scratch/OldScratch/Code_Before122018/CorrFunctions.R scratch/OldScratch/Code_Before122018/SGGP_S3_methods.R scratch/OldScratch/Code_Before122018/SGGPlik.R scratch/OldScratch/Code_Before122018/SGGPpredstuff.R scratch/OldScratch/Code_Before122018/SGGPvalid.R scratch/OldScratch/Code_Before122018/SGGPvalid_not_up_to_date.R scratch/OldScratch/Code_Before122018/SGcreate.R scratch/OldScratch/Code_Before122018/calculate_pw.R scratch/OldScratch/Code_Before122018/plot.R scratch/OldScratch/Code_Before122018/update.R scratch/OldScratch/Old_scratch_122018/MSEcalc_Mat32Exact.R scratch/OldScratch/Old_scratch_122018/SGGP_predspeed_test.R scratch/OldScratch/Old_scratch_122018/after_success.R scratch/OldScratch/Old_scratch_122018/calculate_pw_test2.R scratch/OldScratch/Old_scratch_122018/checklikexact.R scratch/OldScratch/Old_scratch_122018/checkpredexacts2.R scratch/OldScratch/Old_scratch_122018/checkpredondespts.R scratch/OldScratch/Old_scratch_122018/importantMCMC_notes.R scratch/OldScratch/Old_scratch_122018/main_MCMCtest.R scratch/OldScratch/Old_scratch_122018/main_MDouttest.R scratch/OldScratch/Old_scratch_122018/main_shortsimu.R scratch/OldScratch/Old_scratch_122018/mainfile.R scratch/OldScratch/Old_scratch_122018/mainfile2.R scratch/OldScratch/Old_scratch_122018/mainfile3.R scratch/OldScratch/Old_scratch_122018/mainfile4.R scratch/OldScratch/Old_scratch_122018/mainfile5.R scratch/OldScratch/Old_scratch_122018/mainfile6.R scratch/OldScratch/Old_scratch_122018/mainfile8.R scratch/OldScratch/Old_scratch_122018/mse_calc2.R scratch/OldScratch/Old_scratch_122018/plotSG.R scratch/OldScratch/Old_scratch_122018/someCattempt.R scratch/OldScratch/Old_scratch_122018/some_C_code_MSE.R scratch/OldScratch/Old_scratch_122018/trytoreducedims.R scratch/OldScratch/Old_scratch_122018/usefulCscratch.R scratch/OldScratch/OriginalSparseGridFiles/GPstuff.R scratch/OldScratch/OriginalSparseGridFiles/SGGPappendstuff.R scratch/OldScratch/OriginalSparseGridFiles/SGGPlik.R scratch/OldScratch/OriginalSparseGridFiles/SGGPpredstuff.R scratch/OldScratch/OriginalSparseGridFiles/SGcreate.R scratch/OldScratch/OriginalSparseGridFiles/mainfile.R scratch/OldScratch/SGGP_pt2_NoInverse/GPstuff.R scratch/OldScratch/SGGP_pt2_NoInverse/SGGPappendstuff.R scratch/OldScratch/SGGP_pt2_NoInverse/SGGPlik.R scratch/OldScratch/SGGP_pt2_NoInverse/SGGPpredstuff.R scratch/OldScratch/SGGP_pt2_NoInverse/SGcreate.R scratch/OldScratch/SGGP_pt2_NoInverse/mainfile.R scratch/OldScratch/SGGP_pt3_FastPred/GPstuff.R scratch/OldScratch/SGGP_pt3_FastPred/SGGPappendstuff.R scratch/OldScratch/SGGP_pt3_FastPred/SGGPlik.R scratch/OldScratch/SGGP_pt3_FastPred/SGGPpredstuff.R scratch/OldScratch/SGGP_pt3_FastPred/SGcreate.R scratch/OldScratch/SGGP_pt3_FastPred/mainfile.R scratch/OldScratch/main_revision_test.R scratch/OldScratch/main_revision_test2.R scratch/OldScratch/old_supplementalcode/collin_test.R scratch/OldScratch/old_supplementalcode/main_rsupp_test.R scratch/OldScratch/old_supplementalcode/neglogpost_before_speedup.R scratch/OldScratch/old_supplementalcode/supp_speedup_fit.R scratch/OldScratch/old_supplementalcode/supp_speedup_gneglogpost.R scratch/OldScratch/old_supplementalcode/supp_speedup_neglogpost.R scratch/OldScratch/old_supplementalcode/supp_speedup_postvarcalc.R scratch/OldScratch/old_supplementalcode/supp_speedup_returnthings.R

scratch/OldScratch/rcpparma_hello_world.cpp

scratch/OldScratch/scratch_GPflow.R scratch/OldScratch/scratch_LaplacevsMCMC.R scratch/OldScratch/scratch_opd.R scratch/OldScratch/test_against_mleGP.R scratch/OldScratch/test_against_mleGP_MD.R

scratch/SGGP-package.Rd

scratch/Supplement_scratch/SGGP_supplement_fs.R scratch/VisualizeBlocks.R scratch/VisualizeBlocks2.R scratch/VisualizeBlocks3.R scratch/after_success.R scratch/after_success_run_one.R scratch/main_rsupp_test.R scratch/redTime/SGGP_redTime_begin.R scratch/redTime/SGGP_redTime_continue.R scratch/redTime/SGGP_redTime_masterscript.R

scratch/redTime/SGGP_redTime_mastersub.sh

scratch/redTime/SGGP_redTime_parameters.R scratch/redTime/SGGP_redTime_parameters_Sup.R scratch/redTime/SGGP_redTime_parameters_Test1.R scratch/redTime/SGGP_redTime_qsub_unevaluated.R scratch/redTime/SGGP_redTime_restart.R scratch/redTime/SGGP_redTime_restart_completed.R

scratch/redTime/data/ExpandedRanges2_LHS1L_n1000_s0303_all_input.csv

scratch/redTime/data/ExpandedRanges2_LHS1L_n1000_s0303_all_output.csv

scratch/redTime/data/ExpandedRanges2_LHS1L_n1000_s0304_all_input.csv

scratch/redTime/data/ExpandedRanges2_LHS1L_n1000_s0304_all_output.csv

scratch/redTime/data/ExpandedRanges2_LHS1L_n100_s0228_all_input.csv

scratch/redTime/data/ExpandedRanges2_LHS1L_n100_s0228_all_output.csv

scratch/redTime/data/LHS1L_n1000_s1225_Xmatrix.csv

scratch/redTime/data/LHS1L_n1000_s1225_all_output.csv

scratch/redTime/data/LHS1L_n8039_s1226_Xmatrix.csv

scratch/redTime/data/LHS1L_n8039_s1226_all_output.csv

scratch/redTime/extract_redTime.R scratch/redTime/lookatRedTimeResults.R scratch/redTime/lookatRedTimeResults3_checkpattern.R scratch/redTime/lookatRedTimeResults_Big1.R scratch/redTime/lookatRedTimeResults_ExpRanges2.R scratch/redTime/lookatRedTimeResults_ExpRanges3.R scratch/redTime/lookatRedTimeResults_log.R

scratch/redTime/redTimeMVExp1/Exp1_mlegp/Exp1_mlegp_completed.rds

scratch/redTime/redTimeMVExp1/redTimeMVExp1.R

scratch/redTime/redTimeMVExp1/redTimeMVExp1.sh

scratch/redTime/redTimeMVExp2/redTimeMVExp2.R

scratch/redTime/redTimeMVExp2/redTimeMVExp2.sh

scratch/redTime/redTimeSuppExp/redTimeSuppExp.R

scratch/redTime/redTimeSuppExp/redTimeSuppExp1_object.rds

scratch/redTime/redTimeSuppExp/redTimeSuppExp1_od10_object.rds

scratch/redTime/redTimeSuppExp/redTimeSuppExp1_od50_object.rds

scratch/redTime/redTimeSuppExp2/redTimeSuppExp2.R

scratch/redTime/redTimeSuppExp2/redTimeSuppExp2_od10_object.rds

scratch/redTime/redTimeSuppExp2/redTimeSuppExp2_od50_object.rds

scratch/redTime/redTimeSuppExp2/redTimeSuppExp_Results.Rmd scratch/redTime/reloadSGGPonCrunch.R scratch/redTime/run_redTime_LHS.R scratch/redTime/write_param_files.R scratch/redTime/write_sh_files.R scratch/redTime/write_sh_master_file.R scratch/scratch_calcusedforsupp.R scratch/scratch_faststuffcleanversion.R scratch/scratch_faststuffcleanversion2.R scratch/scratch_fixredTimeMV.R scratch/scratch_postvarmatcalc_fullversion.R scratch/scratch_wingweight_profvis.R scratch/scratchplot3D.R

scratch/testing_C_function.cpp

scratch/testing_fit_fs.R scratch/testing_pred_fs.R

src/Makevars

src/Makevars.win

src/RcppExports.cpp

src/specialkronfunctions.cpp

src/testing_C_function.cpp

tests/testthat.R tests/testthat/testS3.R tests/testthat/testappend.R tests/testthat/testcorr.R tests/testthat/testcreate.R tests/testthat/testfastcalcassist.R tests/testthat/testfit.R tests/testthat/testimputation.R tests/testthat/testoutputparamdim.R tests/testthat/testplot.R tests/testthat/testpred.R tests/testthat/testsupponly.R

tools/README-blockplot-1.png

tools/README-corrplot-1.png

tools/README-heat-1.png

tools/README-hist-1.png

tools/README-plotblocks-1.png

tools/README-plotslice-1.png

tools/README-plotslice2-1.png

tools/README-plottheta-1.png

tools/README-projectionplot-1.png

tools/README-projectionplot2-1.png

tools/README-samplesneglogpost-1.png

tools/README-vario-1.png

vignettes/.gitignore

vignettes/CGGP.Rmd

CollinErickson/CGGP documentation built on Feb. 6, 2024, 2:24 a.m.