propPlot: Proportion plot

In ColtoCaro/compMS: Bayesian Compositional Proteomics Modeling via Stan

Description

This function plots the proportion of ions belonging to each biological replicate. The first replicate is typically a bridge channel and all repicates are ordered and colored by experimental condition.

Usage

propPlot(df, gene = NULL, condKey, protName = NULL)

Arguments

df	A dataframe typically generated and stored in the second component of a results list from compBayes.
gene	A string that determines what data will be plotted.
condKey	A matrix with two columns. The first column contains integers denoting the experimental condition for each biological replicate. The second contains integers that represent each biological replicate. This key should be taken from the header information required to run the compBayes function.

ColtoCaro/compMS documentation built on March 13, 2020, 10:11 a.m.