plotReplicateVarAndStableVariables: Write figures displaying pooled coefficient of variance,...
In ComputationalProteomics/NormalyzerDE: Evaluation of normalization methods and calculation of differential expression analysis statistics
View source: R/generatePlots.R
plotReplicateVarAndStableVariables R Documentation
Write figures displaying pooled coefficient of variance, median absolute
deviation and pooled estimate of variance percentage compared to
log2-transformed and stable variables plot displaying CV of stable variables
against pooled CV measure. The stable variables are calculated by an
ANOVA comparison across sample conditions and selecting features with the
least clear difference.
Description
Write figures displaying pooled coefficient of variance, median absolute
deviation and pooled estimate of variance percentage compared to
log2-transformed and stable variables plot displaying CV of stable variables
against pooled CV measure. The stable variables are calculated by an
ANOVA comparison across sample conditions and selecting features with the
least clear difference.
Usage
plotReplicateVarAndStableVariables(nr, currentLayout, pageno)
Arguments
nr
Normalyzer results object.
currentLayout
Layout used for document.
pageno
Current page number.
Value
None
ComputationalProteomics/NormalyzerDE documentation built on Sept. 18, 2023, 9:15 p.m.
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View source: R/generatePlots.R
| plotReplicateVarAndStableVariables | R Documentation |
Write figures displaying pooled coefficient of variance, median absolute deviation and pooled estimate of variance percentage compared to log2-transformed and stable variables plot displaying CV of stable variables against pooled CV measure. The stable variables are calculated by an ANOVA comparison across sample conditions and selecting features with the least clear difference.
Description
Write figures displaying pooled coefficient of variance, median absolute deviation and pooled estimate of variance percentage compared to log2-transformed and stable variables plot displaying CV of stable variables against pooled CV measure. The stable variables are calculated by an ANOVA comparison across sample conditions and selecting features with the least clear difference.
Usage
plotReplicateVarAndStableVariables(nr, currentLayout, pageno)
Arguments
nr |
Normalyzer results object. |
currentLayout |
Layout used for document. |
pageno |
Current page number. |
Value
None
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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