setupRawContrastObject: Prepare SummarizedExperiment object for statistics data

In ComputationalProteomics/NormalyzerDE: Evaluation of normalization methods and calculation of differential expression analysis statistics

Prepare SummarizedExperiment object for statistics data

Description

Prepare SummarizedExperiment object for statistics data

Usage

setupRawContrastObject(dataPath, designPath, sampleColName)

Arguments

dataPath	Path to raw data matrix
designPath	Path to design matrix
sampleColName	Name for column in design matrix containing sample names

Value

experimentObj Prepared instance of SummarizedExperiment

Examples

data_path <- system.file(package="NormalyzerDE", "extdata", "tiny_data.tsv")
design_path <- system.file(package="NormalyzerDE", "extdata", "tiny_design.tsv")
sumExpObj <- setupRawContrastObject(data_path, design_path, "sample")

ComputationalProteomics/NormalyzerDE documentation built on Sept. 18, 2023, 9:15 p.m.