proteinCoding-methods: Only keep protein coding ranges
In ComputationalProteomicsUnit/Pbase: Manipulating and exploring protein and proteomics data
Description
Removed all the ranges that are not protein coding. Typically used on
the output of etrid2grl.
Methods
signature(object="GRanges", mcol="character",
coding="character") Removes all the ranges that are not
annotated as protein coding ranges, i.e. ranges whose
mcols()$mcol is different from coding. The default
values are mcols()feature and
"protein_coding". The method return the GRanges
trimmed from all non-matching ranges.
signature(object="GRangesList", mcol="character",
coding="character")As above but for GRanges in a
GrangesList.
ComputationalProteomicsUnit/Pbase documentation built on Aug. 10, 2019, 1:25 a.m.
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Description
Removed all the ranges that are not protein coding. Typically used on
the output of etrid2grl.
Methods
signature(object="GRanges", mcol="character", coding="character")Removes all the ranges that are not annotated as protein coding ranges, i.e. ranges whose
mcols()$mcolis different fromcoding. The default values aremcols()featureand"protein_coding". The method return theGRangestrimmed from all non-matching ranges.signature(object="GRangesList", mcol="character", coding="character")As above but for
GRangesin aGrangesList.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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