Files in ComputationalProteomicsUnit/Pbase
Manipulating and exploring protein and proteomics data

.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/AAStringSet-functions.R R/AllClasses.R R/AllGenerics.R R/GRanges.R R/Proteins-functions.R R/Proteins-methods.R R/coordinate-mapping-methods.R R/environments.R R/fasta-functions.R R/heavylabels-functions.R R/onAttach.R R/params.R R/peptides-functions.R R/plotting.R R/updateObject.R R/utils.R R/vigfigs.R README.md
data/p.rda
data/pms.rda
inst/extdata/01_test_database.fasta
inst/extdata/04_test_database.fasta
inst/extdata/HUMAN_2015_02_selected.fasta
inst/extdata/Thermo_Hela_PRTC_selected.mgf.gz
inst/extdata/Thermo_Hela_PRTC_selected.mzid
inst/extdata/heavylabels_groundtruth.csv
inst/extdata/heavylabels_proteins_of_interest.fasta
inst/scripts/makep.R inst/vignettes/Pbase-with-ensembldb.Rmd inst/vignettes/ensucsc.Rmd inst/vignettes/mapping.Rmd man/Pparams-class.Rd man/Proteins-class.Rd man/calculateHeavyLabels.Rd man/coordinate-mapping-methods.Rd man/etrid2grl.Rd man/isReverse.Rd man/p.Rd man/plotAsAnnotationTrack.Rd man/proteinCoding-methods.Rd
sandbox/Makefile
sandbox/S00-play-with-proteins.R sandbox/S01-UniProtws.R sandbox/S02-compare-AAStringSetList-vs-IRangesList.R sandbox/S03-coverage-mzID.R sandbox/S03-proteinCoverage-example.R sandbox/S04-BSA-example.R sandbox/code.R
sandbox/overhang/proteins_of_interest.fasta
sandbox/overhang/result_26_09_13.csv
sandbox/overhang/test_heavylabels.R tests/testthat.R tests/testthat/test_AAStringSet-functions.R tests/testthat/test_Proteins-class.R tests/testthat/test_Proteins-ensembldb.R tests/testthat/test_Proteins-functions.R tests/testthat/test_Proteins-methods.R tests/testthat/test_fasta-functions.R tests/testthat/test_heavylabels-functions.R tests/testthat/test_mapToGenome-ensembldb.R tests/testthat/test_peptides-functions.R tests/testthat/test_utils.R vignettes/Pbase-data.Rmd
ComputationalProteomicsUnit/Pbase documentation built on Sept. 11, 2017, 12:03 p.m.