################################################################################
## Proteins
################################################################################
## constructor
if (is.null(getGeneric("Proteins")))
setGeneric("Proteins", function(file, uniprotIds, ...)
standardGeneric("Proteins"))
if (is.null(getGeneric("seqnames")))
setGeneric("seqnames", function(x, ...) standardGeneric("seqnames"))
## replacement
## Building fails without this one, but unclear why!?!
setGeneric("acols<-", function(object, value) standardGeneric("acols<-"))
## methods
if (is.null(getGeneric("addPeptideFragments")))
setGeneric("addPeptideFragments",
function(object, filenames, ...) standardGeneric("addPeptideFragments"))
if (is.null(getGeneric("cleave")))
setGeneric("cleave", function(x, ...) standardGeneric("cleave"))
setGeneric("plot", function(x, y, ...) standardGeneric("plot"))
if (is.null(getGeneric("pfilter")))
setGeneric("pfilter", function(x, y, ...) standardGeneric("pfilter"))
## Ranges
setGeneric("proteinCoding",
function(object, ...) standardGeneric("proteinCoding"))
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