calculatePseudobulks: Trimmed mean pseudobulk and pseudopresence calculation
In CopenhagenCenterForGlycomics/RGlycopacity: What the Package Does (One Line, Title Case)
calculatePseudobulks R Documentation
Trimmed mean pseudobulk and pseudopresence calculation
Description
Compute pseudobulks and pseudopresence values for a
count matrix. The pseudobulk is the average expression
count value for a single cluster of cells. The pseudopresence
is the number of cells that a non-zero count was found in.
Usage
calculatePseudobulks(count.data, renormalize = FALSE, ...)
Arguments
count.data
Count data as a matrix, sparse matrix or Seurat object
Value
Pseudobulks, pseudopresence and cluster sizes
pseudobulks.sm - Sparse matrix with pseudobulk values
pseudopresence.sm - Sparse matrix with counts of cells that non-zero expression was found in
cluster_sizes.vec - Sizes of individual clusters
CopenhagenCenterForGlycomics/RGlycopacity documentation built on Oct. 31, 2024, 3:53 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| calculatePseudobulks | R Documentation |
Trimmed mean pseudobulk and pseudopresence calculation
Description
Compute pseudobulks and pseudopresence values for a count matrix. The pseudobulk is the average expression count value for a single cluster of cells. The pseudopresence is the number of cells that a non-zero count was found in.
Usage
calculatePseudobulks(count.data, renormalize = FALSE, ...)
Arguments
count.data |
Count data as a matrix, sparse matrix or Seurat object |
Value
Pseudobulks, pseudopresence and cluster sizes
pseudobulks.sm - Sparse matrix with pseudobulk values
pseudopresence.sm - Sparse matrix with counts of cells that non-zero expression was found in
cluster_sizes.vec - Sizes of individual clusters
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.