normaliseOnSEGs: reference gene normalisation wrapper
In CopenhagenCenterForGlycomics/RGlycopacity: What the Package Does (One Line, Title Case)
normaliseOnSEGs R Documentation
reference gene normalisation wrapper
Description
normalising on a reference gene for downstream comparison of glycogene ranges of expression
Usage
normaliseOnSEGs(input.mat, genes = row.names(input.mat), log_transform = T)
Arguments
input.mat
n gene x k sample matrix of suitable counts
genes
a named numeric vector of the counts to be transformed. default is rownames of input_mat
log_transform
boolean indicating if a natural log + 1 transform should be applied
Value
a data.frame of genes, annotations, and normalised counts
CopenhagenCenterForGlycomics/RGlycopacity documentation built on Oct. 31, 2024, 3:53 a.m.
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| normaliseOnSEGs | R Documentation |
reference gene normalisation wrapper
Description
normalising on a reference gene for downstream comparison of glycogene ranges of expression
Usage
normaliseOnSEGs(input.mat, genes = row.names(input.mat), log_transform = T)
Arguments
input.mat |
n gene x k sample matrix of suitable counts |
genes |
a named numeric vector of the counts to be transformed. default is rownames of input_mat |
log_transform |
boolean indicating if a natural log + 1 transform should be applied |
Value
a data.frame of genes, annotations, and normalised counts
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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