generate_report_rmd: generate html report for single markers of all cell groups

In CostaLab/sc2marker: Detect marker panel from scRNA-seq profile

generate html report for single markers of all cell groups

Description

generate html report for single markers of all cell groups

Usage

generate_report_rmd(
  scrna,
  markers.list,
  aggr.other = F,
  top_n_genes = 6,
  ridge_ncol = 3,
  fname = NULL,
  fpath = ".",
  assay = "RNA",
  slot = "data",
  org = "human"
)

Arguments

scrna	seurat obj to be used
markers.list	results from Detect_single_marker_all()
top_n_genes	top number of genes for RidgePlot
fname	file name. Default NULL
fpath	Path to generate report
sc2marker_ncol	number of col of Ridgeplot

Value

list of markers performance

CostaLab/sc2marker documentation built on May 12, 2022, 6:05 a.m.