get_gene_score_pos: Calculate gene positive specific score
In CostaLab/sc2marker: Detect marker panel from scRNA-seq profile

get_gene_score_pos

R Documentation

Calculate gene positive specific score

Calculate gene specific score in positive direction

get_gene_score_pos(
  scrna,
  gene,
  id,
  step = 0.01,
  assay = "RNA",
  slot = "data",
  pseudo.count = 0.01
)

`scrna`	obj to use
`gene`	gene to use
`id`	interested cell id
`step`	quantile step
`assay`	which assay to use in obj, default RNA
`slot`	which slot to use, default data

seurat obj with re-set Idents

CostaLab/sc2marker documentation built on May 12, 2022, 6:05 a.m.

CostaLab/sc2marker index

README.md

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