Man pages for CostaLab/scMEGA
Single-cell Multiomic Enhancer-based Gene Regulatory Network Inference
| AddTargetAssay | Add the TF target expression |
| AddTrajectory | Add trajectory |
| CellPropPlot | Plot cell proportion |
| CoembedData | Integrate data |
| CompareCellProp | Compare the cell proportion |
| CorrelationHeatmap | Plot correlation heatmap |
| CorrelationPlot | Plot correlation |
| CreatePairedObject | Create paired object |
| GetCorrelation | Get correlation |
| GetGRN | Get gene regulatory network |
| GetPairList | Get list of paired cells |
| GetTFGeneCorrelation | Get TF gene correlation |
| GetTrajectory | Get data along the trajectory |
| GRNHeatmap | Get a heatmap of TF gene correlation |
| GRNPlot | Get a graph |
| GRNSpatialPlot | Plot the target gene in spatial space |
| NetCentPlot | Centric Plot |
| PairCells | Pair the cells |
| PeakToGene | Get peak to gene links |
| PseudotimePlot | Plot dynamic changes along pseudotime trajectory |
| RunDiffusionMap | Run diffusion map |
| SelectGenes | Select genes |
| SelectTFs | Select TFs for GRN inference |
| TopEmbGRN | PCA of Topological Measures |
| TrajectoryHeatmap | Plot trajectory heatmap |
| TrajectoryPlot | Plot trajectory |
