GetCorrelation: Get correlation

In CostaLab/scMEGA: Single-cell Multiomic Enhancer-based Gene Regulatory Network Inference

Get correlation

Description

This function will compute the correlation between TF expression as measured by RNA-seq and binding activity estimated from ATAC-seq along the trajectory.

Usage

GetCorrelation(trajectory1, trajectory2)

Arguments

trajectory1	A SummarizedExperiment object for TF activity generated by the function GetTrajectory
trajectory2	A SummarizedExperiment object for TF expression generated by the function GetTrajectory

Value

A data frame cantaining the correlation

Examples

## Not run: 
df.cor <- GetCorrelation(
   trajectory1 = trajMM,
   trajectory2 = trajRNA
)

## End(Not run)

CostaLab/scMEGA documentation built on Sept. 25, 2024, 6:11 a.m.