GetPairList: Get list of paired cells
In CostaLab/scMEGA: Single-cell Multiomic Enhancer-based Gene Regulatory Network Inference
GetPairList R Documentation
Get list of paired cells
Description
This function takes in the output of the fullmatch function and sort the
results into a list of ATAC-RNA pairs.
It was modified from https://github.com/buenrostrolab/stimATAC_analyses_code/blob/master/R/optMatching_functions.R
Author: Vinay Kartha, Yan Hu
Contact: <vinay_kartha@g.harvard.edu>
Affiliation: Buenrostro Lab, Department of Stem Cell and Regenerative Biology, Harvard University
Usage
GetPairList(cell_matches, ATAC_barcodes, RNA_barcodes)
Arguments
cell_matches
The output object of fullmatch in the package optmatch
ATAC_barcodes
Barcode of ATAC cells, must match the order of IDs in cell_matches.
RNA_barcodes
Barcode of RNA cells, must match the order of IDs in cell_matches.
Value
A data frame containing the cell pairs
CostaLab/scMEGA documentation built on Sept. 25, 2024, 6:11 a.m.
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| GetPairList | R Documentation |
Get list of paired cells
Description
This function takes in the output of the fullmatch function and sort the
results into a list of ATAC-RNA pairs.
It was modified from https://github.com/buenrostrolab/stimATAC_analyses_code/blob/master/R/optMatching_functions.R
Author: Vinay Kartha, Yan Hu
Contact: <vinay_kartha@g.harvard.edu>
Affiliation: Buenrostro Lab, Department of Stem Cell and Regenerative Biology, Harvard University
Usage
GetPairList(cell_matches, ATAC_barcodes, RNA_barcodes)
Arguments
cell_matches |
The output object of |
ATAC_barcodes |
Barcode of ATAC cells, must match the order of IDs in cell_matches. |
RNA_barcodes |
Barcode of RNA cells, must match the order of IDs in cell_matches. |
Value
A data frame containing the cell pairs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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