analyses/Snakemake_scripts/Import_GTEx_GDS.R
In CreRecombinase/RColumbo: R Package to accompany the Columbo method
library(RColumbo)
args <- commandArgs(trailingOnly = T)
gzfile <- args[1]
GDSfile <- args[2]
tissue <- gsub(".+/([^/]+)_Analysis.snps.txt.gz","\\1",gzfile)
gtissue <- gsub(".+/([^/]+).GDS","\\1",GDSfile)
stopifnot(tissue==gtissue)
write_gtex_gdsn(geno_txt = gzfile,geno_gdsn = GDSfile,chunksize = 650000)
CreRecombinase/RColumbo documentation built on May 6, 2019, 12:52 p.m.
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library(RColumbo)
args <- commandArgs(trailingOnly = T)
gzfile <- args[1]
GDSfile <- args[2]
tissue <- gsub(".+/([^/]+)_Analysis.snps.txt.gz","\\1",gzfile)
gtissue <- gsub(".+/([^/]+).GDS","\\1",GDSfile)
stopifnot(tissue==gtissue)
write_gtex_gdsn(geno_txt = gzfile,geno_gdsn = GDSfile,chunksize = 650000)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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