API for CreRecombinase/RSSReQTL
Map QTL and compute LD using the Wen and Stephens shrinkage estimator.
| Global functions | |
|---|---|
| calcLD | Source code |
| calc_cov | Source code |
| calc_nmsum | Source code |
| calc_resid | Source code |
| calc_residvec | Source code |
| calc_spve | Source code |
| calc_spve_naive | Source code |
| calc_theta | Source code |
| calc_variance | Source code |
| cov_2_cor | Source code |
| dmv_rss | Source code |
| gen_LD | Source code |
| gen_LD_sp | Source code |
| gen_LD_symm | Source code |
| gen_eQTL | Source code |
| glmnet_max | Source code |
| haplo2geno | Source code |
| ld2df | Source code |
| libpath | Source code |
| map_beta_exp | Source code |
| map_eqtl_lm | Source code |
| map_se_exp | Source code |
| orthogonalize_data | Source code |
| rssr_all | Source code |
| rssr_all_norm | Source code |
| rssr_max | Source code |
| rssr_mean | Source code |
| rssr_orthogonalize_covar | Source code |
| rssr_pve | Source code |
| run_RSS | Source code |
| sim_betamat | Source code |
| sim_eff | Source code |
| sim_residmat | Source code |
| sim_y_pve | Source code |
| sim_ys | Source code |
| sp_calcLD | Source code |
| sp_calcLD_symm | Source code |
| sub_calc_spve | Source code |
| tspve_all | Source code |
| varbvs_mean | Source code |
