R/RcppExports.R

Defines functions calc_spve_naive calc_spve sub_calc_spve calc_nmsum calc_theta ld2df calc_cov calc_variance cov_2_cor calcLD sp_calcLD sp_calcLD_symm orthogonalize_data rssr_orthogonalize_covar map_se_exp map_beta_exp map_eqtl_lm

# Generated by using Rcpp::compileAttributes() -> do not edit by hand
# Generator token: 10BE3573-1514-4C36-9D1C-5A225CD40393

calc_spve_naive <- function(R, beta, beta_hat, se_hat, n) {
    .Call('_RSSReQTL_calc_spve_naive', PACKAGE = 'RSSReQTL', R, beta, beta_hat, se_hat, n)
}

calc_spve <- function(R, beta_mat, beta_hat_mat, se_hat_mat, n) {
    .Call('_RSSReQTL_calc_spve', PACKAGE = 'RSSReQTL', R, beta_mat, beta_hat_mat, se_hat_mat, n)
}

sub_calc_spve <- function(R, tbeta, n) {
    .Call('_RSSReQTL_sub_calc_spve', PACKAGE = 'RSSReQTL', R, tbeta, n)
}

calc_nmsum <- function(m) {
    .Call('_RSSReQTL_calc_nmsum', PACKAGE = 'RSSReQTL', m)
}

calc_theta <- function(m) {
    .Call('_RSSReQTL_calc_theta', PACKAGE = 'RSSReQTL', m)
}

ld2df <- function(ldmat, rsid, r2cutoff = 0.01) {
    .Call('_RSSReQTL_ld2df', PACKAGE = 'RSSReQTL', ldmat, rsid, r2cutoff)
}

calc_cov <- function(mat) {
    .Call('_RSSReQTL_calc_cov_exp', PACKAGE = 'RSSReQTL', mat)
}

calc_variance <- function(mat) {
    .Call('_RSSReQTL_calc_variance_exp', PACKAGE = 'RSSReQTL', mat)
}

cov_2_cor <- function(covmat) {
    .Call('_RSSReQTL_cov_2_cor_exp', PACKAGE = 'RSSReQTL', covmat)
}

calcLD <- function(hmata, mapa, m, Ne, cutoff) {
    .Call('_RSSReQTL_calcLD_exp', PACKAGE = 'RSSReQTL', hmata, mapa, m, Ne, cutoff)
}

sp_calcLD <- function(hmata, mapa, m, Ne, cutoff) {
    .Call('_RSSReQTL_sp_calcLD_exp', PACKAGE = 'RSSReQTL', hmata, mapa, m, Ne, cutoff)
}

sp_calcLD_symm <- function(hmata, mapa, m, Ne, cutoff) {
    .Call('_RSSReQTL_sp_calcLD_symm_exp', PACKAGE = 'RSSReQTL', hmata, mapa, m, Ne, cutoff)
}

orthogonalize_data <- function(data, ortho_covar) {
    .Call('_RSSReQTL_orthogonalize_data_exp', PACKAGE = 'RSSReQTL', data, ortho_covar)
}

rssr_orthogonalize_covar <- function(covariates) {
    .Call('_RSSReQTL_rssr_orthogonalize_covar', PACKAGE = 'RSSReQTL', covariates)
}

map_se_exp <- function(genotype, expression, betahat) {
    .Call('_RSSReQTL_map_se_exp', PACKAGE = 'RSSReQTL', genotype, expression, betahat)
}

map_beta_exp <- function(genotype, expression) {
    .Call('_RSSReQTL_map_beta_exp', PACKAGE = 'RSSReQTL', genotype, expression)
}

map_eqtl_lm <- function(genotype, expression) {
    .Call('_RSSReQTL_map_eqtl_lm_exp', PACKAGE = 'RSSReQTL', genotype, expression)
}
CreRecombinase/RSSReQTL documentation built on May 6, 2019, 12:52 p.m.