Files in CreRecombinase/RSSReQTL
Map QTL and compute LD using the Wen and Stephens shrinkage estimator.
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/RcppExports.R
R/h5fun.R
R/halplo2geno.R
R/prep_RSS.R
RSSReQTL.Rproj
data/bighaplo.rda
data/bigmap.rda
data/genomat.rda
data/haplomat.rda
data/mapdat.rda
inst/include/RSSReQTL.h
inst/include/RSSReQTL/LD.h
inst/include/RSSReQTL/RSSReQTL_types.h
inst/include/RSSReQTL/map_eQTL.h
inst/m_files/compute_shrinkage.m
inst/m_files/corrcov.m
inst/m_files/get_corr.m
inst/m_files/get_corr_d.m
inst/m_files/shrink_cov.m
inst/m_files/shrink_m.m
inst/m_files/wrap_corr.m
src/LD.cpp
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/map_eQTL.cpp
tests/testthat.R
tests/testthat/test_R.R
tests/testthat/test_matlab.R
vignettes/LD_estimation.Rmd
