calc_pve | Calculate PVE from sd of u and p/n |
calc_sigu | calculate |
calc_varu | calculate variance of u from pve and p_n |
convert_quh | Convert summary statistics to PC-space |
estimate_pve | compute pve with confounding |
evd_dnorm | RSSp marginalized likelihood function |
evd_dnorm_grad_stan | Gradient for RSSp likelihood This is an attempt to use stan's... |
evd_dnorm_hess_stan | evd_dnorm_hess_stan |
evd_dnorm_stan | evd_dnorm_grad_stan |
gensplit_uh_uf | Function factory for obtaining PC-transformed summary... |
map_convert_quh | Convert chunks of summary statistics to PC-space |
modify_R | Modify LD matrix |
panel_eigenvalues | Sample LD matrix eigenvalues |
post_var_D | Estimate the variance of each eigensnp |
RSSp_estimate | Estimate heritability using RSSp |
RSSp-package | RSSp: Polygenic RSS |
simulate_v | Function for simulating "true" orthogonalized effects given... |
transform_D | Internal helper function for components of the confounding... |
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